Immunizer.h

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/*
 *  This is free software: you can redistribute it and/or modify it
 *  under the terms of the GNU General Public License as published by
 *  the Free Software Foundation, either version 3 of the License, or
 *  any later version.
 *  The software is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *  You should have received a copy of the GNU General Public License
 *  along with the software. If not, see <http://www.gnu.org/licenses/>.
 *
 *  Copyright 2018, Kuylen E, Willem L, Broeckhove J
 */

#pragma once

#include "contact/ContactPool.h"
#include "pop/Population.h"
#include "util/RnMan.h"
#include "util/SegmentedVector.h"

namespace stride {

class Immunizer
{
public:
        explicit Immunizer(util::RnMan& rnManager) : m_rn_man(rnManager) {}

        void Random(const util::SegmentedVector<ContactPool>& pools, std::vector<double>& immunityDistribution,
                    double immunityLinkProbability);

        void Random(std::shared_ptr<Population> pop, std::vector<double>& immunityDistribution, const ContactType::Id contactPoolType, double immunityLinkProbability);

        void Cocoon(const util::SegmentedVector<ContactPool>& /*pools*/, std::vector<double>& /*immunityDistribution*/,
                    double /*immunityLinkProbability*/);

private:
        util::RnMan& m_rn_man; 
};

} // namespace stride