PersonsFile.cpp

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/*
 *  This is free software: you can redistribute it and/or modify it
 *  under the terms of the GNU General Public License as published by
 *  the Free Software Foundation, either version 3 of the License, or
 *  any later version.
 *  The software is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *  You should have received a copy of the GNU General Public License
 *  along with the software. If not, see <http://www.gnu.org/licenses/>.
 *
 *  Copyright 2017, Kuylen E, Willem L, Broeckhove J
 */

#include "PersonsFile.h"

#include "pop/Population.h"
#include "util/FileSys.h"

namespace stride {
namespace output {

using namespace std;
using namespace stride::util;

PersonsFile::PersonsFile(const string& output_prefix) : m_fstream() { Initialize(output_prefix); }

PersonsFile::~PersonsFile() { m_fstream.close(); }

void PersonsFile::Initialize(const string& output_prefix)
{
        const auto p = FileSys::BuildPath(output_prefix, "persons.csv");
        m_fstream.open(p.c_str());
        // add header
        m_fstream << "id,age,is_recovered,is_immune,start_infectiousness,"
                  << "end_infectiousness,start_symptomatic,end_symptomatic" << endl;
}

void PersonsFile::Print(std::shared_ptr<const Population> population)
{
        for (const auto& p : *population) {
                const auto& h = p.GetHealth();
                m_fstream << p.GetId() << "," << p.GetAge() << "," << h.IsRecovered() << "," << h.IsImmune() << ","
                          << h.GetStartInfectiousness() << "," << h.GetEndInfectiousness() << ","
                          << h.GetStartSymptomatic() << "," << h.GetEndSymptomatic() << std::endl;
        }
}

} // namespace output
} // namespace stride