Key Data structure: container for (a) all individuals in the population (b) the ContactPoolSys wchich is used to loop over ContactPools of each type (c) (if present) GeoGrid of Locations, each having an index of ContactPools at that location. More...

#include <Population.h>

Inheritance diagram for stride::Population:

Collaboration diagram for stride::Population:

Public Member Functions
Person *	CreatePerson (unsigned int id, double age, unsigned int householdId, unsigned int k12SchoolId, unsigned int collegeId, unsigned int workId, unsigned int primaryCommunityId, unsigned int secondaryCommunityId)
	Create Person in the population. More...

unsigned int	GetInfectedCount () const
	Get the cumulative number of cases. More...

const ContactPoolSys &	CRefPoolSys () const
	The ContactPoolSys of the simulator. More...

const geopop::GeoGrid &	CRefGeoGrid () const
	Get the GeoGrid associated with this population (may be a nullptr). More...

std::shared_ptr< spdlog::logger > &	RefContactLogger ()
	Return the contactlogger. More...

ContactPoolSys &	RefPoolSys ()
	Reference the ContactPoolSys of the Population. More...

geopop::GeoGrid &	RefGeoGrid ()
	Reference the GeoGrid associated with this population (may be a nullptr). More...

Public Member Functions inherited from stride::util::SegmentedVector< Person, 2048 >
	SegmentedVector ()
	Construct empty SegmentedVector. More...

	SegmentedVector (size_type i)
	Construct with given number of elements but DO NOT INITIALIZE them. More...

	SegmentedVector (size_type i, const value_type &value)
	Construct with given number of elements and INITIALIZE them with value. More...

	SegmentedVector (const self_type &other)
	Copy constructor. More...

	SegmentedVector (self_type &&other) noexcept
	Move constructor. More...

SegmentedVector &	operator= (const self_type &other)
	Copy assignment. More...

SegmentedVector &	operator= (self_type &&other) noexcept
	Move assignment. More...

	~SegmentedVector ()
	Destructor. More...

Person &	at (std::size_t pos)
	Access specified element with bounds checking. More...

const Person &	at (std::size_t pos) const
	Access specified element with bounds checking. More...

Person &	back ()
	Access the last element. More...

const Person &	back () const
	Access the last element. More...

Person &	operator[] (size_t pos)
	Access specified element (no bounds checking). More...

const Person &	operator[] (size_t pos) const
	Access specified element (no bounds checking). More...

iterator	begin ()
	Returns an iterator to the beginning of the container. More...

const_iterator	begin () const
	Returns a const_iterator to the beginning of the container. More...

const_iterator	cbegin () const
	Returns a const_iterator to the beginning of the container. More...

iterator	end ()
	Returns an iterator to the end of the container. More...

const_iterator	end () const
	Returns a const_iterator to the end of the container. More...

const_iterator	cend () const
	Returns a const_iterator to the end. More...

std::size_t	capacity () const
	Returns number of elements that can be stored without allocating additional blocks. More...

bool	empty () const
	Checks whether container is empty. More...

std::size_t	get_block_count () const
	Returns number of currently allocated blocks. More...

std::size_t	get_elements_per_block () const
	Returns number of elements block (template parameter 'N'). More...

std::size_t	size () const
	Returns the number of elements. More...

void	resize (size_type new_size)
	Increases the number of elements (but DOES NOT INITIALIZE the additional elements) or pops elements (and DOES RUN those element's destructor). More...

void	resize (size_type new_size, const value_type &value)

void	clear ()
	Clears the content. More...

Person *	emplace (size_type pos, Args &&...args)
	Constructs element in-place at position pos. More...

Person *	emplace_back (Args &&...args)
	Constructs element in-place at the end. More...

void	pop_back ()
	Removes the last element. More...

Person *	push_back (const Person &obj)
	Adds element to end. More...

Person *	push_back (Person &&obj)
	Adds element to end. More...

Static Public Member Functions
static std::shared_ptr< Population >	Create (const boost::property_tree::ptree &config, util::RnMan rnMan, std::shared_ptr< spdlog::logger > strideLogger=nullptr)
	Create a Population initialized by the configuration in property tree. More...

static std::shared_ptr< Population >	Create (const std::string &configString, util::RnMan rnMan, std::shared_ptr< spdlog::logger > stride_logger=nullptr)
	For use in python environment: create Population using configuration string i.o ptree. More...

static std::shared_ptr< Population >	Create ()
	Create an empty Population, used in gengeopop. More...

Private Member Functions
	Population ()
	Non-trivial default constructor. More...

Private Attributes
ContactPoolSys	m_pool_sys
	The global . More...

std::shared_ptr< spdlog::logger >	m_contact_logger
	Logger for contact/transmission. More...

geopop::GeoGrid	m_geo_grid
	Associated may be nullptr. More...

Additional Inherited Members
Public Types inherited from stride::util::SegmentedVector< Person, 2048 >
using	value_type = Person

using	size_type = std::size_t

using	self_type = SegmentedVector< Person, N >

using	iterator = SVIterator< Person, N, true, Person *, Person &, false >

using	const_iterator = SVIterator< Person, N, true >

Detailed Description

Key Data structure: container for (a) all individuals in the population (b) the ContactPoolSys wchich is used to loop over ContactPools of each type (c) (if present) GeoGrid of Locations, each having an index of ContactPools at that location.

Definition at line 47 of file Population.h.

Constructor & Destructor Documentation

stride::Population::Population ( )

private

Non-trivial default constructor.

Definition at line 45 of file Population.cpp.

Member Function Documentation

std::shared_ptr< Population > stride::Population::Create	(	const boost::property_tree::ptree &	config,
		util::RnMan	rnMan,
		std::shared_ptr< spdlog::logger >	strideLogger = `nullptr`
	)

static

Create a Population initialized by the configuration in property tree.

Definition at line 47 of file Population.cpp.

References stride::ImportPopBuilder::Build(), stride::DefaultPopBuilder::Build(), stride::GeoPopBuilder::Build(), stride::util::FileSys::BuildPath(), Create(), stride::util::LogUtils::CreateNullLogger(), and stride::util::LogUtils::CreateRotatingLogger().

Here is the call graph for this function:

std::shared_ptr< Population > stride::Population::Create	(	const std::string &	configString,
		util::RnMan	rnMan,
		std::shared_ptr< spdlog::logger >	stride_logger = `nullptr`
	)

static

For use in python environment: create Population using configuration string i.o ptree.

Definition at line 90 of file Population.cpp.

References Create(), and stride::util::RunConfigManager::FromString().

Here is the call graph for this function:

std::shared_ptr< Population > stride::Population::Create ( )

static

Create an empty Population, used in gengeopop.

Definition at line 96 of file Population.cpp.

Referenced by stride::GenPopController::Control(), stride::SimController::Control(), stride::StanController::Control(), and Create().

Here is the caller graph for this function:

Person * stride::Population::CreatePerson	(	unsigned int	id,
		double	age,
		unsigned int	householdId,
		unsigned int	k12SchoolId,
		unsigned int	collegeId,
		unsigned int	workId,
		unsigned int	primaryCommunityId,
		unsigned int	secondaryCommunityId
	)